Gmane
From: Peter T. Chattaway <petert@...>
Subject: Genesis, take two
Newsgroups: gmane.music.dadl.ot
Date: 2007-11-06 17:18:32 GMT (1 year, 34 weeks, 2 days, 12 hours and 29 minutes ago)
http://www.theglobeandmail.com/servlet/story/RTGAM.20071102.cover03/BNStory/Science/?page=rss&id=RTGAM.20071102.cover03

ANNE MCILROY
From Saturday's Globe and Mail
November 2, 2007 at 9:34 PM EST

The chicken egg has been prepped for surgery – a pea-size hole cut in the
shell and covered with sticky tape. And now Hans Larsson, a McGill
University researcher, removes it from the incubator, places it under a
microscope and prepares to operate.

He gently peels off the tape and teases back the membranes that line the
shell with tweezers. Through the eyepiece, he can see the tiny dot of a
heart, steadily beating. He can also see the bud where he implants a milky
bead doused in a protein. He hopes it will coax the embryo to grow a big
tail. A dinosaur-like tail.

A paleontologist, Prof. Larsson spends a significant portion of his time
doing traditional dinosaur hunting, digging fossils as far afield as the
Arctic and Africa with jackhammers and pickaxes. But he has long been
frustrated with the limitations of studying old bones and what they reveal
about the mysteries of evolution.

It was by examining ancient skeletons that paleontologists learned that
modern birds, including chickens, descended from dinosaurs and that their
relatives include such fierce predators as Tyrannosaurus rex. What fossils
don't reveal, though, is how exactly such dramatic anatomical changes
first arose. How did teeth the size of bananas turn into beaks? Or mighty
tails become wimpy, feathered stumps?

For answers, Prof. Larsson has turned to the burgeoning field of evo-devo
– or evolutionary developmental biology – a radical new approach to
understanding the past.

It is based on the astonishing discovery that modern animals, including
humans, share many of the same body-building genes and that some of these
genes have been around for millions of years.

How these “master genes” are used during the development of an embryo,
when they are switched on and in what combinations is what makes chickens
look so different from their ancient relatives.

And if you play with this complex genetic choreography in the embryos of
modern chickens, you should, theoretically, be able to resurrect
dinosaur-like features.

All of which means that scientists such as Prof. Larson may actually be
able to mimic what occurred millions of years ago inside dinosaur eggs.

This could offer answers to some of the big questions in evolution. For
example, how did the first wing get built? How did dinosaurs turn into
chickens? In the future, evo-devo may also reveal how the human body is
formed, and what can go wrong.

But if scientists can make chickens look like dinosaurs, what other
creatures might they build? What variations on the human form are
possible? Along with ethical issues, evo-devo also raises humbling
questions about what it means to be human and what we might look like in
the future.

If we are all repositories for ancient genes, could we devolve in the same
way we've evolved? Pressed by radical environmental change, say, could
humans grow fur like the apes or sprout tails like the common primate
ancestor we share with baboons? Could we go back to walking on all fours,
or breathing underwater?

Evo-devo is often characterized as a revolution in evolution, or as a new
science.

In fact, Aristotle noted that chicken embryos went through a stage in
which they looked like worms. And by the 1800s, comparing the physiology
of embryos was a well-established field.

Charles Darwin drew heavily on this work for evidence that modern animals,
including humans, descended from a common ancestor. He noted that the
embryos of many species are far more similar than the adults. He also
argued that many animals show traces of their evolutionary ancestry in
their early stages of development. Some kinds of snakes, for instance,
grow tiny legs as embryos, hinting at forbears that walked instead of
slithered.

After the publication of The Origin of the Species in 1859, embryos were
all the rage among anatomists. Of special interest were creatures such as
the lung fish, which can breathe air and was thought to be a link between
animals that lived in water and those that walked on land.

But interest dwindled in the next century, as modern genetics came to the
fore. Biologists shifted their focus to basic units of heredity – which
turned out to be genes made up of DNA. What makes lobsters look like
lobsters, their argument went, are lobster genes. What makes leopards look
like leopards are leopard genes. Embryos are merely delivery vehicles for
the genes that make each species, including humans, what it is.

“Almost everyone switched to genetics, and embryos got left behind,” says
Brian Hall, a researcher at Dalhousie University in Halifax who is a
pioneer in evo-devo.

Then came shocking evidence of just how much genetic material species have
in common. Humans share almost 99 per cent of their genes with chimpanzees
and 85 per cent with mice. Even the barrel-shaped sea squirt shares 80 per
cent of its genes with us.

Since the 1980s, scientists have also found that the same genes (or very
similar ones) govern embryonic development in animals that are nothing
alike. The construction of the human heart, it turns out, is directed by a
gene that gives insects their primitive hearts. Our eyes are built with
the help of the same gene that directs the formation of eyes in flies and
frogs.

In many animals, the same family of genes – called the Hox family –
determines which end is up, or which part of the embryo will be the head.
Hox genes also tell cells in the embryo which kind of appendage they
should grow – arms, legs, antennae or wings.

And the Hox genes date back half a billion years, evolutionary biologists
say, to the ancestors of all the major animal groups now found on Earth.

Nature, it seems, doesn't like to upgrade construction equipment that is
working well. Why invent a new way to build a leg or an eye when the old
way has been working just fine for hundreds of millions of years?

In other words, while no one has sequenced dinosaur DNA, it is highly
likely that the same genes that directed the embryonic development of T.
rex do the job in the modern chicken. And if all animals – ancient and
modern – share the same body-building genes, it should be possible to get
a chicken embryo to grow a monster tail.

CAN EVOLUTION BE REVERSED?

This may also explain the occasional blast from the past we see in modern
humans: the rare cases of babies born with hairy faces, extra nipples,
short tails or webbed fingers and toes – ancestral traits called atavisms.

According to reports in the medical literature, human tails are sometimes
made up of fatty tissue. But in other cases they have extra vertebrae and
muscle and can move. Most are removed after birth.

Geneticists who have studied this kind of abnormal development say the
genes involved are the same ones that direct the process of laying down
the vertebral column in all animals with spines. But this process stops
earlier in us than in vertebrates with tails – or than they once did in
our ancestors – except in rare cases where the timing is somehow thrown
off.

A Mexican family offers another example of how ancient traits can
resurface, Dalhousie's Prof. Hall says. He wrote a paper about them for
the British journal Nature in 1995 that was accompanied by a picture
showing a six-year-old boy whose entire face, other than his eyes and
lips, is covered with black hair so dense it looks like fur.

The boy is part of a large family and over five generations 19 of his
relatives were born with excessive body hair, especially on their upper
torsos and faces.

Prof. Hall says it is likely that the mutation geneticists found on one of
their chromosomes triggers an ancestral distribution and density of body
hair.

Atavisms have been well documented in other species too. Whales, which
descended from terrestrial mammals, are sometimes found with tiny bones
that look like hind limbs. Horses are sometimes born with three toes, like
their ancestors.

These throwbacks used to be an embarrassment to evolutionary biologists,
Prof. Hall says. How could evolution move backward?

Now, however, they are seen as potent evidence of how much genetic
potential we retain. Snakes may have lost their legs and humans may have
lost their tails, but that doesn't mean the ability to make these
structures has disappeared.

And in the distant future, says Prof. Hall, who has published dozens of
papers about evo-devo and what is considered the seminal text in the
field, humans may once again be furry or grow tails if environmental
conditions favour those developments and the traits get passed down for
many generations.

This would not happen at the pace of Hollywood movies though. In the
futuristic Kevin Costner thriller Waterworld, mutant humans develop fins
and gills in time to cope with the melting ice caps.

In the real world, Prof. Hall says, “it would take a long time.”

RECIPE FOR A DINOSAUR TAIL

In Prof. Larsson's laboratory, meanwhile, experiments with atavisms take
about five days of incubation.

He soaks small beads in a yellowish liquid containing a protein produced
by one of the genes involved in building animal embryos. Then he implants
them in about two dozen eggs.

He suspects that dinosaurs – with their huge tails – used far more of this
protein than modern chickens and that this affected other genes. He hopes
that by tinkering with chicken embryos he may mimic, however briefly, the
process that gave T. rex its mighty appendage.

Like a small but growing number of paleontologists, Prof. Larsson was
attracted to evo-devo because it opens up just this door to recreating the
past. So although the 36-year-old – who studied at McGill and the
University of Chicago – learned the techniques of traditional paleontology
and how to describe ancient life, he has also mastered the tools of
molecular biology and embryology.

It was a coup for McGill to lure him back from the United States, where
top paleontologists are far better funded than in Canada. And Prof.
Larsson, born in Alberta and raised in Ontario, is happy to be back. He
loves that his job combines the thrill of the hunt with the challenges of
experimental science.

“A few of us are realizing that paleontology can be so much more,” he
says.

But figuring out how to get a chicken to grow a dinosaur-like tail isn't
easy. It is a bit like a novice baker trying to make bread with no
instructions and knowing only a fraction of the basic ingredients, say
water and salt. What would you do first?

If you had a recipe, it would tell you to mix the yeast with warm water
and a bit of sugar, then add it to the flour and salt. Next, knead the
dough and let it rise in a warm place.

Without instructions, you might guess that you need yeast, but throw it in
at the last minute. Or use a cup of sugar instead of a few teaspoons. What
if you used a bucket of flour? Or something that looks like flour but
isn't edible, such as plaster of Paris? Or several cups of salt? You could
end up with anything from biscotti to bricks.

The basic ingredients for assembling a dinosaur tail are the proteins
produced by the common body-building genes, but like the novice baker
Prof. Larsson has only a few of them on his grocery list. He is trying to
figure out the rest and get the timing and combinations for the recipe
right.

Luckily, it is relatively easy to play with proteins. “It is amazing, in a
crude scale, the kinds of things we are doing, manipulating timing of
expression of proteins, turning them up or turning them down,” he says.
“You turn this dial to get these ancestral patterns.”

POSSIBILITY AND PRINCIPLE

At this stage, Prof. Larsson is waiting for clear signs of what exactly
his chicks will become.

The tray of embryos in his laboratory fridge – operated on earlier – look
pink and otherworldly. And their tails appear to be significantly longer
than in normal embryos. But they are clearly still too stumpy to qualify
as dinosaurian. Chicken tails typically have four to five free vertebrae,
while dinosaur tails involve 40 to 60.

Still, if Prof. Larsson succeeds with the tails, he will work on getting
the embryos to grow dinosaur-like hands, feet and skulls. And while his
work is confined to embryos right now – they are all killed before they
hatch – if he can create chickens that look like dinosaurs, he says, he
will want to let them grow unhindered, at least once.

He knows, however, that some tough ethical questions will have to be
answered first. “Should this organism be allowed to live? Should we even
be doing this to an embryo with the intent of letting it live? Those
questions have not been brought in the public eye yet,” he says.

To put his work in context, biologists have been creating grotesque and
troubling mutants for decades as they attempted to understand how embryos
develop. The researchers figuring out the details of the Hox genes, for
example, ended up with fruit flies that had feet where their mouths should
have been.

And while ethical questions hang in the air, Prof. Larsson's
contemporaries continue to explore the frontier between the past and the
present, trying to produce evolutionary throwbacks in their labs.

Last year, researchers at the University of Wisconsin and the University
of Manchester coaxed chicken embryos to briefly develop alligator-like
baby teeth. Eventually, the field may move into manipulating developmental
genes in human embryos.

“It is probably not going to be done for many, many decades,” Prof.
Larsson says, “but we certainly have the potential to make a human with 60
back vertebrae [almost twice as many as we now have] or six limbs.”

Other evo-devo scientists are probing how turtles first grew shells, or
why storks have such big beaks and sparrows such little ones. Their work
involves comparing the genes that are at work during various stages of
embryonic development in different, but related species.

For example, Prof. Hall is trying to figure out how some kinds of fish
traded a set of fins for powerful suckers that allow them to hang onto
rocks in strong currents and even climb waterfalls.

So when should we start the conversation about this type of work and where
it may lead? Some might say it is already too late, that the proverbial
genie is out of the bottle. Prof. Larsson argues that it is better to wait
until we know what is possible.

The goal of evo-devo, he says, is not to create bizarre hybrids of ancient
and modern creatures. It is to produce the complete book of life, one that
would explain where modern animals come from and how our different bodies
took shape. It would chart, in exquisite detail, how a single-cell
organism developed into what Darwin described in the final passage of his
most famous book as “endless forms most beautiful and most wonderful.”

“That's the holy grail,” Prof. Larsson says.

Anne McIlroy is The Globe and Mail's science reporter.

--- Peter T. Chattaway ------------- http://filmchatblog.blogspot.com/ ---
Nothing tells memories from ordinary moments; only afterwards do they
   claim remembrance, on account of their scars. -- Chris Marker, La Jetee

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